Variant report

Variant	rs10908703
Chromosome Location	chr1:159252002-159252003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr1:159251920-159252285	A549	lung:	n/a	n/a
2	TEAD4	chr1:159251887-159252212	HepG2	liver:	n/a	n/a
3	TEAD4	chr1:159251834-159252291	K562	blood:	n/a	n/a
4	GATA3	chr1:159251813-159252262	A549	lung:	n/a	n/a
5	STAT3	chr1:159251907-159252216	MCF10A-Er-Src	breast:	n/a	chr1:159252079-159252088
6	CEBPB	chr1:159251882-159252345	A549	lung:	n/a	n/a
7	EP300	chr1:159251859-159252342	Hela-S3	cervix:	n/a	chr1:159252160-159252169 chr1:159252080-159252089
8	STAT3	chr1:159251876-159252066	MCF10A-Er-Src	breast:	n/a	n/a
9	ATF3	chr1:159251767-159252374	A549	lung:	n/a	n/a
10	MAX	chr1:159251910-159252249	Hela-S3	cervix:	n/a	n/a
11	JUN	chr1:159251906-159252208	K562	blood:	n/a	chr1:159252080-159252087 chr1:159252078-159252090 chr1:159252080-159252089
12	SMC3	chr1:159251893-159252256	Hela-S3	cervix:	n/a	n/a
13	FOSL2	chr1:159251932-159252224	HepG2	liver:	n/a	chr1:159252080-159252087 chr1:159252078-159252090 chr1:159252079-159252090 chr1:159252080-159252089
14	FOSL2	chr1:159251785-159252241	A549	lung:	n/a	chr1:159252080-159252087 chr1:159252078-159252090 chr1:159252079-159252090 chr1:159252080-159252089
15	SP1	chr1:159251628-159252496	A549	lung:	n/a	n/a
16	CEBPD	chr1:159251894-159252241	K562	blood:	n/a	n/a
17	JUND	chr1:159251839-159252547	Hela-S3	cervix:	n/a	chr1:159252080-159252087 chr1:159252078-159252089 chr1:159252078-159252090 chr1:159252080-159252089
18	STAT3	chr1:159251920-159252177	MCF10A-Er-Src	breast:	n/a	chr1:159252079-159252088
19	BCL3	chr1:159251745-159252394	A549	lung:	n/a	chr1:159252079-159252088
20	RAD21	chr1:159251909-159252283	Hela-S3	cervix:	n/a	n/a
21	FOS	chr1:159251911-159252220	MCF10A-Er-Src	breast:	n/a	chr1:159252080-159252087 chr1:159252078-159252089 chr1:159252078-159252090 chr1:159252080-159252089
22	JUND	chr1:159251891-159252259	K562	blood:	n/a	chr1:159252080-159252087 chr1:159252078-159252089 chr1:159252078-159252090 chr1:159252080-159252089
23	FOSL2	chr1:159251917-159252206	HepG2	liver:	n/a	chr1:159252080-159252087 chr1:159252078-159252090 chr1:159252079-159252090 chr1:159252080-159252089
24	CCNT2	chr1:159251987-159252267	K562	blood:	n/a	n/a
25	ARID3A	chr1:159251934-159252255	HepG2	liver:	n/a	n/a
26	RCOR1	chr1:159252002-159252212	K562	blood:	n/a	n/a
27	GABPA	chr1:159251808-159252297	A549	lung:	n/a	n/a
28	NR3C1	chr1:159251932-159252223	A549	lung:	n/a	n/a
29	FOS	chr1:159251909-159252243	MCF10A-Er-Src	breast:	n/a	chr1:159252080-159252087 chr1:159252078-159252089 chr1:159252078-159252090 chr1:159252080-159252089
30	CEBPB	chr1:159251930-159252219	HepG2	liver:	n/a	n/a
31	JUN	chr1:159251878-159252383	K562	blood:	n/a	chr1:159252080-159252087 chr1:159252078-159252090 chr1:159252080-159252089
32	TEAD4	chr1:159251774-159252251	A549	lung:	n/a	n/a
33	EP300	chr1:159251770-159252389	A549	lung:	n/a	chr1:159252160-159252169 chr1:159252080-159252089
34	FOXA1	chr1:159251921-159252201	HepG2	liver:	n/a	chr1:159252070-159252082
35	FOS	chr1:159251898-159252294	MCF10A-Er-Src	breast:	n/a	chr1:159252080-159252087 chr1:159252078-159252089 chr1:159252078-159252090 chr1:159252080-159252089
36	ZBTB33	chr1:159251888-159252253	A549	lung:	n/a	n/a
37	EP300	chr1:159251776-159252445	A549	lung:	n/a	chr1:159252160-159252169 chr1:159252080-159252089
38	JUN	chr1:159251890-159252338	Hela-S3	cervix:	n/a	chr1:159252080-159252087 chr1:159252078-159252090 chr1:159252080-159252089
39	FOS	chr1:159251907-159252275	Hela-S3	cervix:	n/a	chr1:159252080-159252087 chr1:159252078-159252089 chr1:159252078-159252090 chr1:159252080-159252089
40	STAT3	chr1:159251866-159252322	Hela-S3	cervix:	n/a	chr1:159252079-159252088 chr1:159252209-159252220
41	EP300	chr1:159251871-159252159	HepG2	liver:	n/a	chr1:159252080-159252089
42	TBP	chr1:159251943-159252274	Hela-S3	cervix:	n/a	n/a
43	JUND	chr1:159251959-159252149	HepG2	liver:	n/a	chr1:159252080-159252087 chr1:159252078-159252089 chr1:159252078-159252090 chr1:159252080-159252089
44	GATA2	chr1:159251925-159252326	HUVEC	blood vessel:	n/a	n/a
45	JUND	chr1:159251964-159252187	HepG2	liver:	n/a	chr1:159252080-159252087 chr1:159252078-159252089 chr1:159252078-159252090 chr1:159252080-159252089
46	JUND	chr1:159251906-159252322	A549	lung:	n/a	chr1:159252080-159252087 chr1:159252078-159252089 chr1:159252078-159252090 chr1:159252080-159252089
47	FOSL2	chr1:159251749-159252664	A549	lung:	n/a	chr1:159252080-159252087 chr1:159252078-159252090 chr1:159252079-159252090 chr1:159252080-159252089
48	FOXA1	chr1:159251921-159252208	HepG2	liver:	n/a	chr1:159252070-159252082
49	MAFK	chr1:159251672-159252249	Hela-S3	cervix:	n/a	chr1:159251809-159251820 chr1:159251703-159251714 chr1:159252080-159252090 chr1:159251810-159251821 chr1:159251704-159251715 chr1:159251702-159251716 chr1:159251810-159251821 chr1:159251809-159251820 chr1:159251703-159251714 chr1:159252155-159252170 chr1:159251703-159251718
50	NR3C1	chr1:159251927-159252224	A549	lung:	n/a	n/a

Variant related genes	Relation type
OR10J2P	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11265159	0.97[ASN][1000 genomes]
rs12083313	0.97[ASN][1000 genomes]
rs12097396	0.97[ASN][1000 genomes]
rs12119226	0.89[EUR][1000 genomes]
rs12137096	0.82[ASN][1000 genomes]
rs12565775	0.81[EUR][1000 genomes]
rs16841957	0.97[ASN][1000 genomes]
rs16841997	0.89[EUR][1000 genomes]
rs2325924	0.90[ASN][1000 genomes]
rs56697178	0.97[ASN][1000 genomes]
rs59012264	0.90[ASN][1000 genomes]
rs60861070	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159250600-159252400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:159251600-159252800	Enhancers	Fetal Intestine Large	intestine
3	chr1:159251600-159252800	Flanking Active TSS	A549	lung
4	chr1:159251800-159252200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:159251800-159252200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:159251800-159252400	Enhancers	Liver	Liver
7	chr1:159251800-159252400	Enhancers	HepG2	liver
8	chr1:159251800-159252600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr1:159251800-159253400	Enhancers	HUVEC	blood vessel
10	chr1:159251800-159253800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:159252000-159252200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:159252000-159252200	Enhancers	Duodenum Mucosa	Duodenum
13	chr1:159252000-159252400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:159252000-159252800	Enhancers	Hela-S3	cervix

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