Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10489856	1.00[YRI][hapmap]
rs10908703	0.89[EUR][1000 genomes]
rs11265165	0.91[TSI][hapmap]
rs12119226	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123454	0.97[AFR][1000 genomes]
rs12135788	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap]
rs12565775	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16841988	0.82[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2325931	0.92[AFR][1000 genomes]
rs2325933	0.87[AFR][1000 genomes]
rs58135923	0.80[ASN][1000 genomes]
rs59488253	0.80[ASN][1000 genomes]
rs60861070	0.82[EUR][1000 genomes]
rs72713652	0.97[AFR][1000 genomes]
rs72713655	0.87[AFR][1000 genomes]
rs72713656	0.87[AFR][1000 genomes]
rs72713657	0.87[AFR][1000 genomes]
rs72713658	0.87[AFR][1000 genomes]
rs72713659	0.90[AFR][1000 genomes]
rs72713662	0.87[AFR][1000 genomes]
rs72713665	0.83[AFR][1000 genomes]
rs72713666	0.83[AFR][1000 genomes]
rs72713670	0.83[AFR][1000 genomes]
rs72713675	0.83[AFR][1000 genomes]
rs7548864	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3410676	chr1:159273348-159273589	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16841997	THBS3	cis	cerebellum	SCAN
rs16841997	DUSP23	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159271000-159274200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:159272600-159273800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr1:159272600-159277000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:159273200-159273400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:159273200-159273600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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