Variant report

Variant	rs16841988
Chromosome Location	chr1:159271377-159271378
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10489856	1.00[YRI][hapmap]
rs10908721	1.00[MEX][hapmap]
rs12119226	0.82[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12119586	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12123454	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12127102	0.92[EUR][1000 genomes]
rs12130400	0.92[EUR][1000 genomes]
rs12131906	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12134212	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12134820	1.00[CEU][hapmap]
rs12135235	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12136904	1.00[CEU][hapmap]
rs12140357	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs12143046	0.89[EUR][1000 genomes]
rs16841956	0.92[EUR][1000 genomes]
rs16841997	0.82[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2325931	0.87[AFR][1000 genomes]
rs2325933	0.89[AFR][1000 genomes]
rs3027070	0.80[EUR][1000 genomes]
rs34479145	0.89[EUR][1000 genomes]
rs4491058	1.00[MEX][hapmap]
rs6427473	1.00[MEX][hapmap]
rs6691297	1.00[MEX][hapmap]
rs72711393	0.89[EUR][1000 genomes]
rs72711395	0.89[EUR][1000 genomes]
rs72713608	0.81[AMR][1000 genomes]
rs72713611	0.92[EUR][1000 genomes]
rs72713622	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713644	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713647	0.81[AMR][1000 genomes]
rs72713652	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713655	0.89[AFR][1000 genomes]
rs72713656	0.89[AFR][1000 genomes]
rs72713657	0.89[AFR][1000 genomes]
rs72713658	0.89[AFR][1000 genomes]
rs72713659	0.86[AFR][1000 genomes]
rs72713662	0.89[AFR][1000 genomes]
rs72713665	0.86[AFR][1000 genomes]
rs72713666	0.86[AFR][1000 genomes]
rs72713670	0.86[AFR][1000 genomes]
rs72713675	0.86[AFR][1000 genomes]
rs74125414	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159269400-159272000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:159270400-159271400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr1:159270600-159271800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:159271000-159274200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:159271200-159272000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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