Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12119586	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12123454	0.89[EUR][1000 genomes]
rs12127102	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12130400	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12131906	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12134212	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12135235	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12143046	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16841956	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16841988	0.89[EUR][1000 genomes]
rs3027070	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55833893	0.85[AFR][1000 genomes]
rs55984710	0.85[AFR][1000 genomes]
rs72711393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72711395	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713611	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72713622	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72713644	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72713652	0.89[EUR][1000 genomes]
rs74122805	0.85[AFR][1000 genomes]
rs74125414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159199600-159211800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:159208800-159209600	Flanking Active TSS	GM12878-XiMat	blood
3	chr1:159208800-159210200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:159208800-159210600	Enhancers	HMEC	breast
5	chr1:159209000-159209600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:159209000-159210000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:159209000-159210600	Enhancers	NHEK	skin
8	chr1:159209000-159211000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:159209200-159210200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:159209200-159210200	Enhancers	HUVEC	blood vessel
11	chr1:159209200-159210400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:159209400-159210000	Enhancers	Hela-S3	cervix

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