Variant report

Variant	rs3027070
Chromosome Location	chr1:159189316-159189317
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12119586	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12123454	0.80[EUR][1000 genomes]
rs12127102	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12130400	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12134212	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12135235	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12143046	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16841956	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16841988	0.80[EUR][1000 genomes]
rs34479145	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55833893	0.84[EUR][1000 genomes]
rs55984710	0.84[EUR][1000 genomes]
rs72711383	0.84[EUR][1000 genomes]
rs72711384	0.84[EUR][1000 genomes]
rs72711385	0.84[EUR][1000 genomes]
rs72711393	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72711395	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72713611	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72713622	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72713644	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72713652	0.80[EUR][1000 genomes]
rs74122805	0.84[EUR][1000 genomes]
rs74125414	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159185000-159190400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:159188000-159190400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr1:159188200-159189400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:159188200-159189400	Enhancers	Fetal Brain Male	brain
5	chr1:159188200-159190200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:159188200-159190200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:159188400-159189400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr1:159188400-159189400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:159188400-159189600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:159188400-159191000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:159188600-159189600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:159188600-159189600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr1:159188600-159190200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr1:159188800-159189400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:159188800-159189400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:159189000-159190800	Enhancers	Fetal Brain Female	brain
17	chr1:159189200-159189600	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr1:159189200-159191000	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links