Variant report

Variant	rs12143046
Chromosome Location	chr1:159212366-159212367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12119586	0.89[EUR][1000 genomes]
rs12123454	0.89[EUR][1000 genomes]
rs12127102	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12130400	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12131906	0.85[EUR][1000 genomes]
rs12134212	0.89[EUR][1000 genomes]
rs12135235	0.89[EUR][1000 genomes]
rs16841956	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16841988	0.89[EUR][1000 genomes]
rs3027070	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34479145	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72711393	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72711395	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713611	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72713622	0.89[EUR][1000 genomes]
rs72713644	0.89[EUR][1000 genomes]
rs72713652	0.89[EUR][1000 genomes]
rs74125414	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159210200-159217000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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