Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12119586	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12123454	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12127102	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12130400	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12134212	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12135235	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12143046	0.85[EUR][1000 genomes]
rs16841956	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16841988	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34479145	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72711393	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72711395	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72713608	0.81[AMR][1000 genomes]
rs72713611	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72713622	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72713644	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72713647	0.81[AMR][1000 genomes]
rs72713652	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74122805	0.81[AMR][1000 genomes]
rs74125414	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7530487	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159253600-159259000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:159253800-159258800	Weak transcription	Primary monocytes fromperipheralblood	blood

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