Variant report

Variant	rs74122805
Chromosome Location	chr1:159218039-159218040
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12131906	0.81[AMR][1000 genomes]
rs12410844	0.87[AFR][1000 genomes]
rs2325933	0.85[EUR][1000 genomes]
rs3027070	0.84[EUR][1000 genomes]
rs34479145	0.85[AFR][1000 genomes]
rs55833893	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55984710	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72711380	0.85[EUR][1000 genomes]
rs72711384	1.00[EUR][1000 genomes]
rs72711385	1.00[EUR][1000 genomes]
rs72711395	0.94[AFR][1000 genomes]
rs72713608	0.95[EUR][1000 genomes]
rs72713642	0.85[EUR][1000 genomes]
rs72713647	0.85[EUR][1000 genomes]
rs72713649	0.85[EUR][1000 genomes]
rs72713655	0.85[EUR][1000 genomes]
rs72713656	0.85[EUR][1000 genomes]
rs72713657	0.85[EUR][1000 genomes]
rs72713658	0.85[EUR][1000 genomes]
rs72713662	0.85[EUR][1000 genomes]
rs72713665	0.85[EUR][1000 genomes]
rs72713666	0.85[EUR][1000 genomes]
rs72713670	0.85[EUR][1000 genomes]
rs72713675	0.85[EUR][1000 genomes]
rs74125414	0.85[AFR][1000 genomes]
rs7530487	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9651047	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159217000-159218400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:159217000-159218400	Enhancers	NHEK	skin
3	chr1:159217200-159218400	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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