Variant report
| Variant | rs72713665 |
|---|---|
| Chromosome Location | chr1:159289058-159289059 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chr1:159288919-159289276 | HUVEC | blood vessel: | n/a | chr1:159289156-159289165 |
| 2 | POLR2A | chr1:159288940-159289420 | HUVEC | blood vessel: | n/a | n/a |
| 3 | POLR2A | chr1:159288985-159289310 | HUVEC | blood vessel: | n/a | n/a |
| 4 | GATA2 | chr1:159288749-159289422 | HUVEC | blood vessel: | n/a | chr1:159289155-159289165 |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:159278536..159280740-chr1:159287173..159289621,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR10J3 | TF binding region |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs12119226 | 0.83[AFR][1000 genomes] |
| rs12123454 | 0.86[AFR][1000 genomes] |
| rs16841988 | 0.86[AFR][1000 genomes] |
| rs16841997 | 0.83[AFR][1000 genomes] |
| rs2325931 | 0.91[AFR][1000 genomes] |
| rs2325933 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55833893 | 0.85[EUR][1000 genomes] |
| rs55984710 | 0.85[EUR][1000 genomes] |
| rs72711384 | 0.85[EUR][1000 genomes] |
| rs72711385 | 0.85[EUR][1000 genomes] |
| rs72713608 | 0.90[EUR][1000 genomes] |
| rs72713642 | 1.00[EUR][1000 genomes] |
| rs72713647 | 1.00[EUR][1000 genomes] |
| rs72713649 | 1.00[EUR][1000 genomes] |
| rs72713652 | 0.86[AFR][1000 genomes] |
| rs72713655 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713656 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713657 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713658 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713659 | 0.93[AFR][1000 genomes] |
| rs72713662 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713666 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713670 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713675 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73029816 | 0.89[EUR][1000 genomes] |
| rs73029820 | 0.89[EUR][1000 genomes] |
| rs73029821 | 0.89[EUR][1000 genomes] |
| rs74122805 | 0.85[EUR][1000 genomes] |
| rs7530487 | 0.81[EUR][1000 genomes] |
| rs9651047 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872487 | chr1:159196765-159342439 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv872488 | chr1:159218266-159336948 | Flanking Active TSS Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:159287800-159290400 | Enhancers | HUVEC | blood vessel |
| 2 | chr1:159288400-159290000 | Enhancers | Primary monocytes fromperipheralblood | blood |
| 3 | chr1:159288800-159289600 | Flanking Active TSS | Monocytes-CD14+_RO01746 | blood |
