Variant report

Variant	rs73029820
Chromosome Location	chr1:159309843-159309844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2325933	0.89[EUR][1000 genomes]
rs72713642	0.89[EUR][1000 genomes]
rs72713647	0.89[EUR][1000 genomes]
rs72713649	0.89[EUR][1000 genomes]
rs72713655	0.89[EUR][1000 genomes]
rs72713656	0.89[EUR][1000 genomes]
rs72713657	0.89[EUR][1000 genomes]
rs72713658	0.89[EUR][1000 genomes]
rs72713662	0.89[EUR][1000 genomes]
rs72713665	0.89[EUR][1000 genomes]
rs72713666	0.89[EUR][1000 genomes]
rs72713670	0.89[EUR][1000 genomes]
rs72713675	0.89[EUR][1000 genomes]
rs73029816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73029821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9651047	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3451967	chr1:159299928-159322549	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159309200-159310200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:159309600-159310200	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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