Variant report
| Variant | rs72713658 |
|---|---|
| Chromosome Location | chr1:159286810-159286811 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs12119226 | 0.87[AFR][1000 genomes] |
| rs12123454 | 0.90[AFR][1000 genomes] |
| rs16841988 | 0.89[AFR][1000 genomes] |
| rs16841997 | 0.87[AFR][1000 genomes] |
| rs2325931 | 0.95[AFR][1000 genomes] |
| rs2325933 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55833893 | 0.85[EUR][1000 genomes] |
| rs55984710 | 0.85[EUR][1000 genomes] |
| rs72711384 | 0.85[EUR][1000 genomes] |
| rs72711385 | 0.85[EUR][1000 genomes] |
| rs72713608 | 0.90[EUR][1000 genomes] |
| rs72713642 | 1.00[EUR][1000 genomes] |
| rs72713647 | 1.00[EUR][1000 genomes] |
| rs72713649 | 1.00[EUR][1000 genomes] |
| rs72713652 | 0.90[AFR][1000 genomes] |
| rs72713655 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713656 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713657 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713659 | 0.96[AFR][1000 genomes] |
| rs72713662 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713665 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713666 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713670 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72713675 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73029816 | 0.89[EUR][1000 genomes] |
| rs73029820 | 0.89[EUR][1000 genomes] |
| rs73029821 | 0.89[EUR][1000 genomes] |
| rs74122805 | 0.85[EUR][1000 genomes] |
| rs7530487 | 0.81[EUR][1000 genomes] |
| rs9651047 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872487 | chr1:159196765-159342439 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv872488 | chr1:159218266-159336948 | Flanking Active TSS Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:159286600-159288400 | Weak transcription | Primary monocytes fromperipheralblood | blood |
| 2 | chr1:159286600-159288400 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
