Variant report

Variant	rs2325933
Chromosome Location	chr1:159281950-159281951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12119226	0.87[AFR][1000 genomes]
rs12123454	0.90[AFR][1000 genomes]
rs16841988	0.89[AFR][1000 genomes]
rs16841997	0.87[AFR][1000 genomes]
rs16842035	0.98[ASN][1000 genomes]
rs17422193	0.93[ASN][1000 genomes]
rs2325931	0.95[AFR][1000 genomes]
rs34657392	0.93[ASN][1000 genomes]
rs35634161	0.82[ASN][1000 genomes]
rs35764077	0.93[ASN][1000 genomes]
rs35878335	0.82[ASN][1000 genomes]
rs55833893	0.85[EUR][1000 genomes]
rs55984710	0.85[EUR][1000 genomes]
rs71632665	0.81[ASN][1000 genomes]
rs72711384	0.85[EUR][1000 genomes]
rs72711385	0.85[EUR][1000 genomes]
rs72713608	0.90[EUR][1000 genomes]
rs72713642	1.00[EUR][1000 genomes]
rs72713647	1.00[EUR][1000 genomes]
rs72713649	1.00[EUR][1000 genomes]
rs72713652	0.90[AFR][1000 genomes]
rs72713655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713659	0.96[AFR][1000 genomes]
rs72713662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713665	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713666	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713670	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713675	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73029816	0.89[EUR][1000 genomes]
rs73029820	0.89[EUR][1000 genomes]
rs73029821	0.89[EUR][1000 genomes]
rs74122805	0.85[EUR][1000 genomes]
rs7530487	0.81[EUR][1000 genomes]
rs9651047	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159279200-159284400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:159279800-159284200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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