Variant report

Variant	rs34657392
Chromosome Location	chr9:80243717-80243718
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11265192	0.92[EUR][1000 genomes]
rs12732651	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16842035	0.95[ASN][1000 genomes]
rs17422193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325933	0.93[ASN][1000 genomes]
rs34182990	1.00[AMR][1000 genomes]
rs34530697	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34716133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35214585	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35566124	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35634161	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35764077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35878335	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4506456	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71632665	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71632669	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71632670	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72713656	0.95[ASN][1000 genomes]
rs72713657	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831629	chr9:80114007-80279505	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:80239000-80246800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:80239000-80260200	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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