Variant report
| Variant | rs71632670 |
|---|---|
| Chromosome Location | chr1:159433707-159433708 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:159431052..159434339-chr1:159434896..159437861,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000224943 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11265192 | 1.00[EUR][1000 genomes] |
| rs12732651 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17422193 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs34182990 | 1.00[AMR][1000 genomes] |
| rs34530697 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs34657392 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs34716133 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs35214585 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs35566124 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35634161 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs35764077 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs35878335 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4328070 | 0.91[ASN][1000 genomes] |
| rs4503341 | 0.88[ASN][1000 genomes] |
| rs4506456 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4548436 | 0.88[ASN][1000 genomes] |
| rs71632665 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs71632669 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73013337 | 0.91[ASN][1000 genomes] |
| rs73013340 | 0.91[ASN][1000 genomes] |
| rs73013346 | 0.91[ASN][1000 genomes] |
| rs73013355 | 0.91[ASN][1000 genomes] |
| rs73013360 | 0.82[ASN][1000 genomes] |
| rs73013361 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3334702 | chr1:159415928-159442349 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv432975 | chr1:159431927-159461927 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
