Variant report
| Variant | rs16842035 |
|---|---|
| Chromosome Location | chr1:159290829-159290830 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000196266 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs17422193 | 0.95[ASN][1000 genomes] |
| rs2325933 | 0.98[ASN][1000 genomes] |
| rs34530697 | 0.80[ASN][1000 genomes] |
| rs34657392 | 0.95[ASN][1000 genomes] |
| rs35634161 | 0.85[ASN][1000 genomes] |
| rs35764077 | 0.95[ASN][1000 genomes] |
| rs35878335 | 0.85[ASN][1000 genomes] |
| rs4506456 | 0.80[ASN][1000 genomes] |
| rs71632665 | 0.83[ASN][1000 genomes] |
| rs72713656 | 1.00[ASN][1000 genomes] |
| rs72713657 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872487 | chr1:159196765-159342439 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv872488 | chr1:159218266-159336948 | Flanking Active TSS Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
