Variant report

Variant	rs12135235
Chromosome Location	chr1:159259029-159259030
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr1:159258881-159259204	K562	blood:	n/a	n/a
2	GATA2	chr1:159258798-159259273	K562	blood:	n/a	chr1:159259137-159259146
3	NR2F2	chr1:159258857-159259153	K562	blood:	n/a	n/a
4	TEAD4	chr1:159258886-159259251	K562	blood:	n/a	n/a
5	POLR2A	chr1:159258890-159259247	K562	blood:	n/a	n/a
6	POLR2A	chr1:159258898-159259071	K562	blood:	n/a	n/a
7	GATA1	chr1:159258678-159259403	PBDE	blood:	n/a	chr1:159259137-159259146
8	TAL1	chr1:159258804-159259232	K562	blood:	n/a	chr1:159259046-159259054 chr1:159259136-159259144
9	TEAD4	chr1:159258866-159259211	K562	blood:	n/a	n/a

Variant related genes	Relation type
FCER1A	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10908721	1.00[MEX][hapmap]
rs12119586	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12123454	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12127102	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12130400	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12131906	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12134212	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12134820	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12136904	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12140357	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12143046	0.89[EUR][1000 genomes]
rs16841956	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16841988	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3027070	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34479145	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4491058	1.00[MEX][hapmap]
rs6427473	1.00[MEX][hapmap]
rs6691297	1.00[MEX][hapmap]
rs72711393	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72711395	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72713608	0.90[AMR][1000 genomes]
rs72713611	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72713622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713644	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713647	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72713652	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74125414	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159258800-159263000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:159259000-159260200	Enhancers	Monocytes-CD14+_RO01746	blood

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