Variant report

Variant	rs12140357
Chromosome Location	chr1:159266171-159266172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12119586	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12123454	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12127102	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12130400	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12131906	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12134212	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12134820	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12135235	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12136904	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12143046	0.89[EUR][1000 genomes]
rs16841956	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16841988	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3027070	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34479145	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72711393	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72711395	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72713608	0.90[AMR][1000 genomes]
rs72713611	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72713622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713644	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72713647	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72713652	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74125414	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links