Variant report

Variant	rs6427473
Chromosome Location	chr1:159431735-159431736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159431052..159434339-chr1:159434896..159437861,3	K562	blood:

Variant related genes	Relation type
ENSG00000224943	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10157356	1.00[EUR][1000 genomes]
rs10157831	1.00[EUR][1000 genomes]
rs10159061	1.00[EUR][1000 genomes]
rs10752629	1.00[EUR][1000 genomes]
rs10797038	1.00[EUR][1000 genomes]
rs10797039	1.00[EUR][1000 genomes]
rs10908721	0.93[ASW][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10908728	0.89[EUR][1000 genomes]
rs10908729	0.89[EUR][1000 genomes]
rs11265207	1.00[EUR][1000 genomes]
rs11265210	1.00[EUR][1000 genomes]
rs11265212	1.00[EUR][1000 genomes]
rs12119586	1.00[MEX][hapmap]
rs12135235	1.00[MEX][hapmap]
rs16841988	1.00[MEX][hapmap]
rs3122632	1.00[EUR][1000 genomes]
rs3122634	1.00[EUR][1000 genomes]
rs4403627	0.89[EUR][1000 genomes]
rs4415558	0.89[EUR][1000 genomes]
rs4491058	0.93[ASW][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap]
rs4532833	0.89[EUR][1000 genomes]
rs4573514	1.00[EUR][1000 genomes]
rs4590667	0.89[EUR][1000 genomes]
rs4641306	0.89[EUR][1000 genomes]
rs4656823	0.81[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4656825	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6427475	1.00[EUR][1000 genomes]
rs6664431	1.00[EUR][1000 genomes]
rs6664777	1.00[EUR][1000 genomes]
rs6664977	1.00[EUR][1000 genomes]
rs6664991	1.00[EUR][1000 genomes]
rs6684416	0.89[EUR][1000 genomes]
rs6688273	1.00[EUR][1000 genomes]
rs6691297	0.80[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs6695508	0.89[EUR][1000 genomes]
rs7514531	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7518439	1.00[EUR][1000 genomes]
rs7521652	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7526196	0.81[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7544275	1.00[EUR][1000 genomes]
rs7552361	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334702	chr1:159415928-159442349	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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