Variant report

Variant	rs3122632
Chromosome Location	chr1:159378835-159378836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:159378622-159379157	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr1:159378721-159379150	HUVEC	blood vessel:	n/a	n/a
3	GATA2	chr1:159378638-159379341	HUVEC	blood vessel:	n/a	chr1:159378957-159378973 chr1:159378959-159378971 chr1:159378964-159378971 chr1:159378956-159378970
4	POLR2A	chr1:159378678-159379025	HUVEC	blood vessel:	n/a	n/a
5	FOS	chr1:159378543-159379140	HUVEC	blood vessel:	n/a	chr1:159378909-159378920
6	POLR2A	chr1:159378782-159379017	HUVEC	blood vessel:	n/a	n/a
7	JUN	chr1:159378669-159379123	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
OR10J9P	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10157356	1.00[EUR][1000 genomes]
rs10157831	1.00[EUR][1000 genomes]
rs10159061	1.00[EUR][1000 genomes]
rs10752629	1.00[EUR][1000 genomes]
rs10797038	1.00[EUR][1000 genomes]
rs10797039	1.00[EUR][1000 genomes]
rs10908721	0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10908728	0.89[EUR][1000 genomes]
rs10908729	0.89[EUR][1000 genomes]
rs11265207	1.00[EUR][1000 genomes]
rs11265210	1.00[EUR][1000 genomes]
rs11265212	1.00[EUR][1000 genomes]
rs3122634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4403627	0.89[EUR][1000 genomes]
rs4415558	0.89[EUR][1000 genomes]
rs4491058	0.88[YRI][hapmap]
rs4532833	0.89[EUR][1000 genomes]
rs4573514	1.00[EUR][1000 genomes]
rs4590667	0.89[EUR][1000 genomes]
rs4641306	0.89[EUR][1000 genomes]
rs4656823	0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4656825	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6427473	1.00[EUR][1000 genomes]
rs6427475	1.00[EUR][1000 genomes]
rs6664431	1.00[EUR][1000 genomes]
rs6664777	1.00[EUR][1000 genomes]
rs6664977	1.00[EUR][1000 genomes]
rs6664991	1.00[EUR][1000 genomes]
rs6684416	0.89[EUR][1000 genomes]
rs6688273	1.00[EUR][1000 genomes]
rs6691297	0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6695508	0.89[EUR][1000 genomes]
rs7514531	0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7518439	1.00[EUR][1000 genomes]
rs7521652	1.00[EUR][1000 genomes]
rs7526196	0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544275	1.00[EUR][1000 genomes]
rs7552361	1.00[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159378400-159379600	Enhancers	HUVEC	blood vessel
2	chr1:159378800-159379200	Enhancers	HUES64 Cell Line	embryonic stem cell

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