Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10489854	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10908703	0.97[ASN][1000 genomes]
rs11265159	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265164	0.98[EUR][1000 genomes]
rs12083313	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087219	0.98[EUR][1000 genomes]
rs12097396	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137096	0.84[ASN][1000 genomes]
rs12562171	1.00[AFR][1000 genomes]
rs12564837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16841967	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16842010	1.00[AFR][1000 genomes]
rs2269718	1.00[AFR][1000 genomes]
rs2269719	1.00[AFR][1000 genomes]
rs2325915	0.84[EUR][1000 genomes]
rs2325924	0.92[ASN][1000 genomes]
rs56697178	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58037016	1.00[AFR][1000 genomes]
rs59012264	0.92[ASN][1000 genomes]
rs60861070	1.00[ASN][1000 genomes]
rs61601273	1.00[AFR][1000 genomes]
rs72633670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159246000-159251800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr1:159247400-159249600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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