Variant report

Variant	rs12097396
Chromosome Location	chr1:159248522-159248523
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10489850	0.98[AFR][1000 genomes]
rs10489851	0.98[AFR][1000 genomes]
rs10489852	0.98[AFR][1000 genomes]
rs10489853	0.98[AFR][1000 genomes]
rs10489854	0.98[EUR][1000 genomes]
rs10489855	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10908703	0.97[ASN][1000 genomes]
rs11265159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265164	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074418	0.98[AFR][1000 genomes]
rs12074452	0.92[AFR][1000 genomes]
rs12078114	0.98[AFR][1000 genomes]
rs12078168	0.98[AFR][1000 genomes]
rs12079229	0.98[AFR][1000 genomes]
rs12082893	0.98[AFR][1000 genomes]
rs12083313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12085001	0.96[AFR][1000 genomes]
rs12085686	0.98[AFR][1000 genomes]
rs12086871	0.98[AFR][1000 genomes]
rs12087219	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12096257	0.98[AFR][1000 genomes]
rs12137096	0.84[ASN][1000 genomes]
rs12564837	0.98[EUR][1000 genomes]
rs13374880	0.98[AFR][1000 genomes]
rs13374886	0.95[AFR][1000 genomes]
rs16841957	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841967	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes]
rs16841970	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs2325915	0.82[EUR][1000 genomes]
rs2325923	0.98[AFR][1000 genomes]
rs2325924	0.92[ASN][1000 genomes]
rs2325925	0.98[AFR][1000 genomes]
rs2325927	0.98[AFR][1000 genomes]
rs28537540	0.98[AFR][1000 genomes]
rs3893415	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs4255380	0.96[AFR][1000 genomes]
rs4534374	0.98[AFR][1000 genomes]
rs4568831	0.98[AFR][1000 genomes]
rs56697178	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59012264	0.92[ASN][1000 genomes]
rs60861070	1.00[ASN][1000 genomes]
rs6670082	0.98[AFR][1000 genomes]
rs6670592	0.98[AFR][1000 genomes]
rs6670703	0.94[AFR][1000 genomes]
rs6673514	0.98[AFR][1000 genomes]
rs6695631	0.98[AFR][1000 genomes]
rs6696230	0.98[AFR][1000 genomes]
rs72633670	0.91[EUR][1000 genomes]
rs73027932	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159246000-159251800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr1:159247400-159249600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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