Variant report

Variant	rs13374886
Chromosome Location	chr1:159233554-159233555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10489850	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10489851	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10489852	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10489853	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11265147	0.83[AMR][1000 genomes]
rs11265148	0.83[AMR][1000 genomes]
rs11265151	0.83[AMR][1000 genomes]
rs11265153	0.83[AMR][1000 genomes]
rs11265159	0.95[AFR][1000 genomes]
rs11265164	0.94[AFR][1000 genomes]
rs12067678	0.83[AMR][1000 genomes]
rs12068651	0.83[AMR][1000 genomes]
rs12074418	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12074452	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12078114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12078168	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079229	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082893	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12083313	0.95[AFR][1000 genomes]
rs12085001	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12085686	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086871	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096257	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097396	0.95[AFR][1000 genomes]
rs13374880	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16841937	0.83[AMR][1000 genomes]
rs16841970	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2325923	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2325925	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2325927	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28537540	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34152791	0.83[AMR][1000 genomes]
rs3893415	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4255380	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4534374	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4568831	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56113018	0.83[AMR][1000 genomes]
rs56697178	0.95[AFR][1000 genomes]
rs6670082	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670592	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670703	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6673514	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6695631	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6696230	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027932	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159232800-159236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:159233200-159236000	Weak transcription	NHEK	skin
3	chr1:159233200-159236200	Weak transcription	HUVEC	blood vessel
4	chr1:159233400-159236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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