Variant report

Variant	rs3027077
Chromosome Location	chr1:159191648-159191649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159190196..159193032-chr1:159194970..159197300,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10489848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489854	0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.90[ASN][1000 genomes]
rs10489855	0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs11265146	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265164	0.90[ASN][1000 genomes]
rs12087219	0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs12121203	0.85[ASN][1000 genomes]
rs12137096	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12561917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12564837	0.90[ASN][1000 genomes]
rs12568101	1.00[ASN][1000 genomes]
rs16841967	0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs2269718	0.84[JPT][hapmap]
rs2269719	0.80[JPT][hapmap]
rs2325914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2325915	0.93[ASN][1000 genomes]
rs3027051	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3027055	0.91[ASN][1000 genomes]
rs3027056	0.91[ASN][1000 genomes]
rs3027061	0.91[ASN][1000 genomes]
rs3027063	0.91[ASN][1000 genomes]
rs3027074	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3027075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34127467	0.82[AMR][1000 genomes]
rs34497749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34757892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35014997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35262301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35921532	0.91[ASN][1000 genomes]
rs3845624	0.85[ASN][1000 genomes]
rs4498802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4656165	1.00[ASW][hapmap]
rs60069993	0.85[ASN][1000 genomes]
rs72633670	0.90[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3027077	PVRL4	cis	cerebellum	SCAN
rs3027077	DARC	cis	cerebellum	SCAN
rs3027077	NDUFS2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159190400-159193400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:159191400-159193000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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