Variant report

Variant	rs56854683
Chromosome Location	chr1:159233711-159233712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16841953	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16842016	0.83[AMR][1000 genomes]
rs34268064	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35307067	0.85[AMR][1000 genomes]
rs35606379	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs36233781	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55691277	0.83[AMR][1000 genomes]
rs56389770	0.91[AFR][1000 genomes]
rs58135923	0.82[AFR][1000 genomes]
rs59488253	0.84[AFR][1000 genomes]
rs61828190	0.83[AFR][1000 genomes]
rs61828208	0.88[AFR][1000 genomes]
rs61828210	0.88[AFR][1000 genomes]
rs61828211	0.85[AFR][1000 genomes]
rs6685135	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6693639	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73027927	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027971	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159232800-159236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:159233200-159236000	Weak transcription	NHEK	skin
3	chr1:159233200-159236200	Weak transcription	HUVEC	blood vessel
4	chr1:159233400-159236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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