Variant report

Variant	rs16841953
Chromosome Location	chr1:159246335-159246336
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16842016	0.83[AMR][1000 genomes]
rs34268064	0.85[AMR][1000 genomes]
rs35307067	0.85[AMR][1000 genomes]
rs35606379	0.85[AMR][1000 genomes]
rs36233781	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55691277	0.83[AMR][1000 genomes]
rs56389770	0.92[AFR][1000 genomes]
rs56854683	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58135923	0.83[AFR][1000 genomes]
rs59488253	0.85[AFR][1000 genomes]
rs61828208	0.81[AFR][1000 genomes]
rs61828210	0.81[AFR][1000 genomes]
rs6665683	0.86[ASW][hapmap];0.90[YRI][hapmap]
rs6685135	0.85[AMR][1000 genomes]
rs6693639	0.85[AMR][1000 genomes]
rs73027927	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027971	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159246000-159251800	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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