Variant report

Variant	rs73027971
Chromosome Location	chr1:159273306-159273307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16841953	0.83[AMR][1000 genomes]
rs16842016	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36233781	0.83[AMR][1000 genomes]
rs55691277	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56854683	0.83[AMR][1000 genomes]
rs73027927	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159271000-159274200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:159272600-159273800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr1:159272600-159277000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:159273200-159273400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:159273200-159273600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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