Variant report

Variant	rs28420559
Chromosome Location	chr1:159445481-159445482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10797040	0.85[AMR][1000 genomes]
rs10797041	0.86[AMR][1000 genomes]
rs10797042	0.85[AMR][1000 genomes]
rs11265208	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265211	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12124964	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126265	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127293	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131358	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132709	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133664	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12133727	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12135090	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141291	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12143746	0.84[ASN][1000 genomes]
rs12409528	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12409540	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12410757	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12750941	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12756262	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17422585	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34000798	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4133289	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4284261	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4325129	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4656827	0.85[AMR][1000 genomes]
rs61821494	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61821495	1.00[ASN][1000 genomes]
rs61821510	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61821536	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61821537	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61828219	0.86[AFR][1000 genomes]
rs6677055	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6683536	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6696020	0.84[ASN][1000 genomes]
rs6698250	0.85[AMR][1000 genomes]
rs72715662	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7511872	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7519020	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7522607	0.87[AFR][1000 genomes]
rs7540007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7541480	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551346	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7555008	0.82[EUR][1000 genomes]
rs7556355	1.00[ASN][1000 genomes]
rs9628657	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432975	chr1:159431927-159461927	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159440400-159456600	Weak transcription	Liver	Liver
2	chr1:159444400-159445800	Enhancers	HMEC	breast
3	chr1:159444600-159445600	Weak transcription	HUVEC	blood vessel
4	chr1:159445000-159446000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:159445400-159446400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:159445400-159461800	Weak transcription	Muscle Satellite Cultured Cells	--

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