Variant report

Variant	rs12409540
Chromosome Location	chr1:159410340-159410341
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11265208	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12124964	1.00[ASN][1000 genomes]
rs12126265	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12127293	1.00[ASN][1000 genomes]
rs12131358	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12132709	1.00[ASN][1000 genomes]
rs12135090	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12143746	0.84[ASN][1000 genomes]
rs12409528	1.00[ASN][1000 genomes]
rs12410757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12750941	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12756262	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17422585	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28420559	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34000798	1.00[ASN][1000 genomes]
rs3845625	1.00[YRI][hapmap]
rs4133289	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4548435	1.00[YRI][hapmap]
rs61821494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61821495	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61821510	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6683536	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696020	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7511872	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7519020	1.00[ASN][1000 genomes]
rs7522607	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7540007	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7541480	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7549785	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7551346	1.00[ASN][1000 genomes]
rs7553515	1.00[YRI][hapmap]
rs7556355	1.00[ASN][1000 genomes]
rs981677	1.00[CHB][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159410000-159410800	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr1:159410000-159412400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:159410200-159414600	Enhancers	Fetal Intestine Small	intestine

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