Variant report

Variant	rs58476971
Chromosome Location	chr1:159436311-159436312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12095599	0.88[AMR][1000 genomes]
rs16842041	0.83[AMR][1000 genomes]
rs16842073	0.80[AFR][1000 genomes]
rs59994773	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6687017	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6697809	0.89[AFR][1000 genomes]
rs73013347	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73031627	0.83[AFR][1000 genomes]
rs73031650	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7515532	0.88[AMR][1000 genomes]
rs7519283	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334702	chr1:159415928-159442349	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv432975	chr1:159431927-159461927	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159435200-159438400	Active TSS	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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