Variant report
| Variant | rs59994773 |
|---|---|
| Chromosome Location | chr1:159431907-159431908 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:159431052..159434339-chr1:159434896..159437861,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000224943 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs12095599 | 0.88[AMR][1000 genomes] |
| rs16842041 | 0.83[AMR][1000 genomes] |
| rs16842073 | 0.82[AFR][1000 genomes] |
| rs58476971 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6687017 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs6697809 | 0.91[AFR][1000 genomes] |
| rs73013347 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs73031627 | 0.84[AFR][1000 genomes] |
| rs73031650 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7515532 | 0.88[AMR][1000 genomes] |
| rs7519283 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3334702 | chr1:159415928-159442349 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
