Variant report

Variant	rs73013319
Chromosome Location	chr1:159443213-159443214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr1:159443175-159443447	MCF10A-Er-Src	breast:	n/a	n/a
2	GATA2	chr1:159442264-159443611	HUVEC	blood vessel:	n/a	n/a
3	FOS	chr1:159442321-159443704	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr1:159442321-159443624	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr1:159443145-159443221	MCF10A-Er-Src	breast:	n/a	n/a
6	POLR2A	chr1:159442403-159443760	HUVEC	blood vessel:	n/a	n/a
7	FOS	chr1:159443130-159443576	MCF10A-Er-Src	breast:	n/a	n/a
8	MYC	chr1:159443108-159443483	MCF10A-Er-Src	breast:	n/a	n/a
9	MYC	chr1:159443163-159443580	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr1:159442967-159443635	HUVEC	blood vessel:	n/a	n/a
11	FOS	chr1:159443136-159443535	MCF10A-Er-Src	breast:	n/a	n/a
12	FOS	chr1:159443089-159443552	MCF10A-Er-Src	breast:	n/a	n/a
13	FOS	chr1:159443116-159443554	MCF10A-Er-Src	breast:	n/a	n/a
14	STAT3	chr1:159443195-159443529	MCF10A-Er-Src	breast:	n/a	chr1:159443490-159443502

Variant related genes	Relation type
ENSG00000228560	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs13375571	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13375614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13375812	0.90[AFR][1000 genomes]
rs13376196	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4328070	0.96[AFR][1000 genomes]
rs4584388	0.90[AFR][1000 genomes]
rs4636457	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55836400	0.90[AFR][1000 genomes]
rs56376195	0.90[AFR][1000 genomes]
rs57115562	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59594015	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6696020	0.84[AFR][1000 genomes]
rs73013306	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013308	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013313	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013315	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013316	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013323	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013326	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013335	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013337	0.96[AFR][1000 genomes]
rs73013340	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013346	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013349	0.83[AFR][1000 genomes]
rs73013352	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013355	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013357	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013360	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013361	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017432	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017434	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017437	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017439	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017469	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017477	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027947	1.00[AMR][1000 genomes]
rs73027965	1.00[AMR][1000 genomes]
rs73029830	1.00[AMR][1000 genomes]
rs73031609	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031611	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031623	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031628	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031644	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031647	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432975	chr1:159431927-159461927	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159438200-159444600	Enhancers	HUVEC	blood vessel
2	chr1:159439600-159445400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:159440400-159456600	Weak transcription	Liver	Liver
4	chr1:159442600-159443400	Enhancers	HMEC	breast
5	chr1:159442600-159443600	Enhancers	Osteobl	bone

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