Variant report

Variant	rs73013323
Chromosome Location	chr1:159444708-159444709
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs13375571	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13375614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13375812	0.88[AFR][1000 genomes]
rs13376196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4328070	0.94[AFR][1000 genomes]
rs4584388	0.88[AFR][1000 genomes]
rs4636457	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55836400	0.88[AFR][1000 genomes]
rs56376195	0.88[AFR][1000 genomes]
rs57115562	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59594015	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6696020	0.82[AFR][1000 genomes]
rs73013306	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013308	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013312	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013313	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013315	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013316	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013319	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013329	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013335	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013337	0.94[AFR][1000 genomes]
rs73013340	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013346	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013349	0.81[AFR][1000 genomes]
rs73013352	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013355	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013357	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013360	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013361	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017432	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017434	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017437	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017439	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017469	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017477	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027947	1.00[AMR][1000 genomes]
rs73027965	1.00[AMR][1000 genomes]
rs73029830	1.00[AMR][1000 genomes]
rs73031609	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031611	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031623	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031628	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031644	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031647	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432975	chr1:159431927-159461927	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159439600-159445400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr1:159440400-159456600	Weak transcription	Liver	Liver
3	chr1:159444400-159445800	Enhancers	HMEC	breast
4	chr1:159444600-159445600	Weak transcription	HUVEC	blood vessel

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