Variant report

Variant	rs12087366
Chromosome Location	chr1:159181363-159181364
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr1:159181296-159181636	GM12878	blood:	n/a	chr1:159181502-159181521
2	RAD21	chr1:159181279-159181682	ECC-1	luminal epithelium:	n/a	chr1:159181502-159181521
3	RAD21	chr1:159181307-159181652	K562	blood:	n/a	chr1:159181502-159181521
4	CTCF	chr1:159180633-159181935	A549	lung:	n/a	chr1:159181190-159181199 chr1:159181499-159181520 chr1:159181187-159181205 chr1:159181504-159181522
5	ZNF143	chr1:159181357-159181710	K562	blood:	n/a	n/a
6	CTCF	chr1:159181335-159181698	K562	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
7	RAD21	chr1:159181342-159181688	A549	lung:	n/a	chr1:159181502-159181521
8	RAD21	chr1:159181149-159181714	GM12878	blood:	n/a	chr1:159181502-159181521
9	RAD21	chr1:159181309-159181663	SK-N-SH_RA	brain:	n/a	chr1:159181502-159181521
10	CTCF	chr1:159181278-159181642	H1-hESC	embryonic stem cell:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
11	SMC3	chr1:159181358-159181700	HepG2	liver:	n/a	chr1:159181506-159181520
12	CTCF	chr1:159181340-159181490	GM12870	blood:	n/a	n/a
13	RCOR1	chr1:159181289-159181583	K562	blood:	n/a	n/a
14	RAD21	chr1:159181362-159181641	K562	blood:	n/a	chr1:159181502-159181521
15	CEBPB	chr1:159181152-159181598	H1-hESC	embryonic stem cell:	n/a	chr1:159181329-159181342 chr1:159181329-159181342 chr1:159181329-159181342 chr1:159181329-159181340
16	RAD21	chr1:159181295-159181697	IMR90	lung:	n/a	chr1:159181502-159181521
17	RAD21	chr1:159181280-159181683	GM12878	blood:	n/a	chr1:159181502-159181521
18	RAD21	chr1:159181309-159181588	HepG2	liver:	n/a	chr1:159181502-159181521
19	ZNF143	chr1:159181306-159181696	H1-hESC	embryonic stem cell:	n/a	n/a
20	RAD21	chr1:159180913-159181915	SK-N-SH	brain:	n/a	chr1:159181502-159181521
21	STAT3	chr1:159181173-159181519	MCF10A-Er-Src	breast:	n/a	n/a
22	CTCF	chr1:159181207-159181672	A549	lung:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
23	ZNF143	chr1:159181325-159181693	GM12878	blood:	n/a	n/a
24	CEBPB	chr1:159181209-159181387	K562	blood:	n/a	chr1:159181329-159181342 chr1:159181329-159181342 chr1:159181329-159181342 chr1:159181329-159181340
25	CTCF	chr1:159181360-159181510	WI-38	lung:	n/a	n/a
26	E2F4	chr1:159181026-159181595	MCF10A-Er-Src	breast:	n/a	n/a
27	MYC	chr1:159180850-159181487	MCF10A-Er-Src	breast:	n/a	n/a
28	RAD21	chr1:159181225-159181749	H1-hESC	embryonic stem cell:	n/a	chr1:159181502-159181521
29	WRNIP1	chr1:159181303-159181625	GM12878	blood:	n/a	n/a
30	CTCF	chr1:159181311-159181637	T-47D	breast:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
31	CTCF	chr1:159181263-159181749	T-47D	breast:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
32	CTCF	chr1:159181360-159181510	HCT-116	colon:	n/a	n/a
33	FOS	chr1:159181013-159181827	HUVEC	blood vessel:	n/a	chr1:159181242-159181253 chr1:159181243-159181253 chr1:159181243-159181253 chr1:159181243-159181253
34	POLR2A	chr1:159181359-159181366	MCF10A-Er-Src	breast:	n/a	n/a
35	CEBPB	chr1:159181202-159181520	Hela-S3	cervix:	n/a	chr1:159181329-159181342 chr1:159181329-159181342 chr1:159181329-159181342 chr1:159181329-159181340
36	RAD21	chr1:159181164-159181715	H1-hESC	embryonic stem cell:	n/a	chr1:159181502-159181521
37	CTCF	chr1:159181354-159181649	GM19238	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
38	SMC3	chr1:159181191-159181774	GM12878	blood:	n/a	chr1:159181506-159181520
39	CTCF	chr1:159181361-159181650	GM19240	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
40	JUND	chr1:159181006-159181577	H1-hESC	embryonic stem cell:	n/a	chr1:159181243-159181253 chr1:159181243-159181253 chr1:159181243-159181253
41	CTCF	chr1:159181260-159181410	A549	lung:	n/a	n/a
42	CTCF	chr1:159181295-159181741	HepG2	liver:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
43	RAD21	chr1:159181303-159181714	ECC-1	luminal epithelium:	n/a	chr1:159181502-159181521
44	RAD21	chr1:159181287-159181731	HepG2	liver:	n/a	chr1:159181502-159181521
45	CTCF	chr1:159181254-159181764	HCT-116	colon:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
46	MAZ	chr1:159181289-159181675	K562	blood:	n/a	n/a
47	FOS	chr1:159181148-159181484	MCF10A-Er-Src	breast:	n/a	chr1:159181242-159181253 chr1:159181243-159181253 chr1:159181243-159181253 chr1:159181243-159181253
48	CTCF	chr1:159181360-159181510	A549	lung:	n/a	n/a
49	SMC3	chr1:159181288-159181699	Hela-S3	cervix:	n/a	chr1:159181506-159181520
50	RAD21	chr1:159181208-159181749	H1-hESC	embryonic stem cell:	n/a	chr1:159181502-159181521

No.	Distal block	Cell Line	Cell type
1	chr1:159130520..159131495-chr1:159180884..159182144,24	K562	blood:
2	chr1:159129691..159131233-chr1:159180012..159181804,2	MCF-7	breast:
3	chr1:159174604..159177754-chr1:159180035..159182676,3	K562	blood:
4	chr1:159101820..159102345-chr1:159180944..159181952,4	MCF-7	breast:
5	chr1:159129289..159129912-chr1:159181140..159181994,2	MCF-7	breast:
6	chr1:159130498..159131890-chr1:159181009..159182449,9	MCF-7	breast:
7	chr1:159131846..159132446-chr1:159181062..159181654,2	MCF-7	breast:
8	chr1:159101871..159102754-chr1:159180441..159181987,6	K562	blood:
9	chr1:159167007..159168193-chr1:159181056..159182026,4	MCF-7	breast:
10	chr1:159090280..159090949-chr1:159180874..159181620,2	MCF-7	breast:
11	chr1:159130523..159131496-chr1:159179878..159182456,22	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225670	TF binding region
ENSG00000213088	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10047107	1.00[EUR][1000 genomes]
rs10437336	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10437337	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10489847	1.00[EUR][1000 genomes]
rs10489850	1.00[EUR][1000 genomes]
rs10489851	1.00[EUR][1000 genomes]
rs10489852	1.00[EUR][1000 genomes]
rs10489853	1.00[EUR][1000 genomes]
rs11265143	0.88[AFR][1000 genomes]
rs11265145	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265147	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265148	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265151	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265153	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265167	1.00[EUR][1000 genomes]
rs12057331	1.00[EUR][1000 genomes]
rs12060241	1.00[EUR][1000 genomes]
rs12062367	1.00[EUR][1000 genomes]
rs12063682	1.00[EUR][1000 genomes]
rs12063973	1.00[EUR][1000 genomes]
rs12064129	1.00[EUR][1000 genomes]
rs12064962	1.00[EUR][1000 genomes]
rs12067678	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12068030	1.00[EUR][1000 genomes]
rs12068651	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074418	1.00[EUR][1000 genomes]
rs12074452	1.00[EUR][1000 genomes]
rs12074934	1.00[EUR][1000 genomes]
rs12078114	1.00[EUR][1000 genomes]
rs12078168	1.00[EUR][1000 genomes]
rs12079229	1.00[EUR][1000 genomes]
rs12079235	1.00[EUR][1000 genomes]
rs12082893	1.00[EUR][1000 genomes]
rs12085001	1.00[EUR][1000 genomes]
rs12085085	1.00[EUR][1000 genomes]
rs12085686	1.00[EUR][1000 genomes]
rs12086637	1.00[EUR][1000 genomes]
rs12086871	1.00[EUR][1000 genomes]
rs12095599	1.00[EUR][1000 genomes]
rs12096257	1.00[EUR][1000 genomes]
rs13374880	1.00[EUR][1000 genomes]
rs16841729	1.00[EUR][1000 genomes]
rs16841784	1.00[EUR][1000 genomes]
rs16841789	1.00[EUR][1000 genomes]
rs16841937	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16841970	1.00[EUR][1000 genomes]
rs16842041	1.00[EUR][1000 genomes]
rs2325923	1.00[EUR][1000 genomes]
rs2325925	1.00[EUR][1000 genomes]
rs2325927	1.00[EUR][1000 genomes]
rs2746042	1.00[EUR][1000 genomes]
rs28537540	1.00[EUR][1000 genomes]
rs3026944	1.00[EUR][1000 genomes]
rs3026947	1.00[EUR][1000 genomes]
rs3026970	1.00[EUR][1000 genomes]
rs3026984	1.00[EUR][1000 genomes]
rs3027031	0.87[AFR][1000 genomes]
rs3027040	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3027041	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3027046	1.00[EUR][1000 genomes]
rs3027047	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3027050	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3027054	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3027057	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3027066	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34152791	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34870435	1.00[EUR][1000 genomes]
rs35122728	1.00[EUR][1000 genomes]
rs36103299	1.00[EUR][1000 genomes]
rs36160848	1.00[EUR][1000 genomes]
rs3893415	1.00[EUR][1000 genomes]
rs4255380	1.00[EUR][1000 genomes]
rs4534374	1.00[EUR][1000 genomes]
rs4568831	1.00[EUR][1000 genomes]
rs56113018	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59437380	1.00[EUR][1000 genomes]
rs6656586	1.00[EUR][1000 genomes]
rs6670082	1.00[EUR][1000 genomes]
rs6670592	1.00[EUR][1000 genomes]
rs6670703	1.00[EUR][1000 genomes]
rs6673514	1.00[EUR][1000 genomes]
rs6695631	1.00[EUR][1000 genomes]
rs6696230	1.00[EUR][1000 genomes]
rs73023773	1.00[EUR][1000 genomes]
rs73023775	1.00[EUR][1000 genomes]
rs73027932	1.00[EUR][1000 genomes]
rs74122265	1.00[EUR][1000 genomes]
rs7515532	1.00[EUR][1000 genomes]
rs7552141	1.00[EUR][1000 genomes]
rs856059	1.00[EUR][1000 genomes]
rs856060	1.00[EUR][1000 genomes]
rs856061	1.00[EUR][1000 genomes]
rs856062	1.00[EUR][1000 genomes]
rs856063	1.00[EUR][1000 genomes]
rs856065	1.00[EUR][1000 genomes]
rs856069	1.00[EUR][1000 genomes]
rs856078	1.00[EUR][1000 genomes]
rs864439	1.00[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159158800-159188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:159178200-159182200	Weak transcription	Spleen	Spleen
3	chr1:159178200-159188000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:159178800-159181400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:159180600-159181800	Enhancers	A549	lung
6	chr1:159180800-159181400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:159180800-159181400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:159180800-159181400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:159181000-159181400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr1:159181000-159181400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:159181000-159181400	Enhancers	Placenta	Placenta
12	chr1:159181000-159181400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
13	chr1:159181000-159181600	Enhancers	HSMMtube	muscle
14	chr1:159181000-159181800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:159181000-159182000	Enhancers	HSMM	muscle
16	chr1:159181200-159181400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr1:159181200-159181400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr1:159181200-159181400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr1:159181200-159181400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
20	chr1:159181200-159181400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:159181200-159181400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr1:159181200-159181400	Bivalent Enhancer	Fetal Intestine Large	intestine
23	chr1:159181200-159181400	Flanking Active TSS	Osteobl	bone
24	chr1:159181200-159181600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:159181200-159181600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:159181200-159181600	Flanking Active TSS	HUVEC	blood vessel

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