The 2.0 version of rSNPBase

Variant report

Variant rs856062
Chromosome Location chr1:158980530-158980531
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:158970800-158980800 Weak transcription Pancreas Pancrea
2 chr1:158976000-158983000 Weak transcription Spleen Spleen
3 chr1:158976000-159000800 Weak transcription Gastric stomach
4 chr1:158977200-158990400 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr1:158977800-158982400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr1:158978200-158981400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
7 chr1:158978600-158984200 Active TSS Rectal Smooth Muscle rectum
8 chr1:158978800-158983800 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
9 chr1:158978800-158985800 Active TSS Rectal Mucosa Donor 29 rectum
10 chr1:158979000-158980800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:158979000-158981200 Active TSS Brain Inferior Temporal Lobe brain
12 chr1:158979200-158980600 Active TSS Brain Dorsolateral Prefrontal Cortex brain
13 chr1:158979200-158981000 Active TSS Aorta Aorta
14 chr1:158979200-158981200 Active TSS Colonic Mucosa Colon
15 chr1:158979200-158981200 Active TSS Psoas Muscle Psoas
16 chr1:158979200-158982600 Active TSS Fetal Stomach stomach
17 chr1:158979200-158982800 Active TSS NHLF lung
18 chr1:158979200-158983200 Active TSS Rectal Mucosa Donor 31 rectum
19 chr1:158979200-158983400 Active TSS Right Atrium heart
20 chr1:158979200-158984000 Active TSS Stomach Smooth Muscle stomach
21 chr1:158979400-158980600 Active TSS Brain Substantia Nigra brain
22 chr1:158979400-158980800 Active TSS Primary Natural Killer cells fromperipheralblood blood
23 chr1:158979400-158980800 Active TSS Brain Cingulate Gyrus brain
24 chr1:158979400-158981000 Active TSS Brain Angular Gyrus brain
25 chr1:158979400-158981000 Active TSS Sigmoid Colon Sigmoid Colon
26 chr1:158979400-158981000 Active TSS Dnd41 blood
27 chr1:158979400-158981200 Active TSS Fetal Intestine Small intestine
28 chr1:158979400-158981200 Active TSS Left Ventricle heart
29 chr1:158979400-158981400 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr1:158979400-158981600 Active TSS Primary T helper naive cells fromperipheralblood blood
31 chr1:158979400-158981600 Active TSS Primary T helper memory cells from peripheral blood 1 blood
32 chr1:158979400-158982000 Active TSS Primary T helper naive cells from peripheral blood blood
33 chr1:158979400-158982200 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
34 chr1:158979400-158982200 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
35 chr1:158979400-158982200 Active TSS NHDF-Ad bronchial
36 chr1:158979400-158982400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
37 chr1:158979400-158982400 Active TSS Fetal Kidney kidney
38 chr1:158979400-158982400 Active TSS Fetal Lung lung
39 chr1:158979400-158982400 Active TSS HSMM muscle
40 chr1:158979400-158982400 Active TSS HSMMtube muscle
41 chr1:158979400-158982800 Active TSS Fetal Intestine Large intestine
42 chr1:158979400-158983000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:158979400-158983000 Active TSS Primary T cells fromperipheralblood blood
44 chr1:158979400-158983000 Active TSS Ovary ovary
45 chr1:158979400-158983000 Active TSS Thymus Thymus
46 chr1:158979400-158983200 Active TSS Breast Myoepithelial Primary Cells Breast
47 chr1:158979400-158983200 Active TSS Skeletal Muscle Male skeletal muscle
48 chr1:158979400-158983400 Active TSS Primary T helper cells PMA-I stimulated --
49 chr1:158979400-158983600 Active TSS Fetal Muscle Leg muscle
50 chr1:158979400-158983600 Active TSS Placenta Placenta

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Last update: Aug 31, 2015