Variant report

Variant	rs1341409
Chromosome Location	chr1:158940812-158940813
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10489847	1.00[EUR][1000 genomes]
rs1101999	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1102000	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1102017	1.00[EUR][1000 genomes]
rs1104171	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057331	1.00[EUR][1000 genomes]
rs12059838	1.00[EUR][1000 genomes]
rs12060241	1.00[EUR][1000 genomes]
rs12061139	1.00[EUR][1000 genomes]
rs12062789	1.00[EUR][1000 genomes]
rs12063682	1.00[EUR][1000 genomes]
rs12063973	1.00[EUR][1000 genomes]
rs12064129	1.00[EUR][1000 genomes]
rs12068030	1.00[EUR][1000 genomes]
rs1612810	1.00[EUR][1000 genomes]
rs1612844	1.00[EUR][1000 genomes]
rs1616270	1.00[EUR][1000 genomes]
rs1626284	1.00[EUR][1000 genomes]
rs1629682	1.00[EUR][1000 genomes]
rs1629702	1.00[EUR][1000 genomes]
rs1631448	1.00[EUR][1000 genomes]
rs1633293	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1633296	1.00[EUR][1000 genomes]
rs1633298	1.00[EUR][1000 genomes]
rs16841729	1.00[EUR][1000 genomes]
rs16841784	1.00[EUR][1000 genomes]
rs16841789	1.00[EUR][1000 genomes]
rs1772398	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1772439	1.00[EUR][1000 genomes]
rs1772441	1.00[EUR][1000 genomes]
rs1772442	1.00[EUR][1000 genomes]
rs1772444	1.00[EUR][1000 genomes]
rs3026944	1.00[EUR][1000 genomes]
rs3026947	1.00[EUR][1000 genomes]
rs3026970	1.00[EUR][1000 genomes]
rs35122728	1.00[EUR][1000 genomes]
rs36103299	1.00[EUR][1000 genomes]
rs73023773	1.00[EUR][1000 genomes]
rs73023775	1.00[EUR][1000 genomes]
rs74122265	1.00[EUR][1000 genomes]
rs856048	1.00[ASN][1000 genomes]
rs856059	1.00[EUR][1000 genomes]
rs856060	1.00[EUR][1000 genomes]
rs856061	1.00[EUR][1000 genomes]
rs856062	1.00[EUR][1000 genomes]
rs856063	1.00[EUR][1000 genomes]
rs856065	1.00[EUR][1000 genomes]
rs856069	1.00[EUR][1000 genomes]
rs856075	1.00[EUR][1000 genomes]
rs856076	1.00[EUR][1000 genomes]
rs856078	1.00[EUR][1000 genomes]
rs856082	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs856087	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs856128	1.00[EUR][1000 genomes]
rs856130	1.00[EUR][1000 genomes]
rs856137	1.00[EUR][1000 genomes]
rs856138	1.00[EUR][1000 genomes]
rs856139	1.00[EUR][1000 genomes]
rs856144	1.00[EUR][1000 genomes]
rs856145	1.00[EUR][1000 genomes]
rs856147	1.00[EUR][1000 genomes]
rs856148	1.00[EUR][1000 genomes]
rs864439	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3376764	chr1:158761947-158998617	Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3369957	chr1:158915589-159003393	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158920600-158950600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:158923000-158949600	Weak transcription	Primary B cells from cord blood	blood
3	chr1:158932400-158942400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr1:158933400-158941200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr1:158933400-158943000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:158933400-158949400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr1:158935200-158941400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:158937000-158944000	Weak transcription	Primary T cells from cord blood	blood
9	chr1:158939600-158943000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:158939600-158946000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:158940400-158942800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr1:158940600-158953000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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