Variant report

Variant	rs3027031
Chromosome Location	chr1:159178273-159178274
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr1:159177958-159178275	K562	blood:	n/a	n/a
2	ZNF143	chr1:159177894-159178595	H1-hESC	embryonic stem cell:	n/a	n/a
3	SIN3A	chr1:159177677-159178632	H1-hESC	embryonic stem cell:	n/a	n/a
4	REST	chr1:159177899-159178599	MCF-7	breast:	n/a	n/a
5	REST	chr1:159177732-159178678	HL-60	blood:	n/a	n/a
6	REST	chr1:159177741-159178618	GM12878	blood:	n/a	n/a
7	REST	chr1:159177828-159178643	ECC-1	luminal epithelium:	n/a	n/a
8	REST	chr1:159177828-159178586	K562	blood:	n/a	n/a
9	REST	chr1:159177772-159178303	PFSK-1	brain:	n/a	n/a
10	REST	chr1:159177893-159178334	Hela-S3	cervix:	n/a	n/a
11	REST	chr1:159177636-159178723	H1-hESC	embryonic stem cell:	n/a	n/a
12	REST	chr1:159177906-159178637	HL-60	blood:	n/a	n/a
13	REST	chr1:159177582-159178764	H1-hESC	embryonic stem cell:	n/a	n/a
14	REST	chr1:159177781-159178293	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000225670	TF binding region

rs_ID	r²[population]
rs11265143	0.86[AFR][1000 genomes]
rs11265145	0.87[AFR][1000 genomes]
rs12087366	0.87[AFR][1000 genomes]
rs3027009	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs3027013	0.94[EUR][1000 genomes]
rs3027041	0.82[AFR][1000 genomes]
rs3027047	0.89[AFR][1000 genomes]
rs3027050	0.89[AFR][1000 genomes]
rs3027057	0.87[AFR][1000 genomes]
rs41313908	0.92[EUR][1000 genomes]
rs61828181	0.98[EUR][1000 genomes]

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159158800-159188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:159176600-159179200	Enhancers	Fetal Brain Male	brain
3	chr1:159177400-159178600	Flanking Active TSS	Brain Germinal Matrix	brain
4	chr1:159177600-159178400	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr1:159177600-159178400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:159177600-159178400	Flanking Active TSS	Fetal Brain Female	brain
7	chr1:159177800-159178600	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr1:159177800-159179000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:159178000-159178400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
10	chr1:159178000-159178400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr1:159178000-159178400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr1:159178200-159178400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:159178200-159178400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr1:159178200-159178400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
15	chr1:159178200-159178800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:159178200-159178800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr1:159178200-159178800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:159178200-159179000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:159178200-159179000	Weak transcription	Placenta	Placenta
20	chr1:159178200-159182200	Weak transcription	Spleen	Spleen
21	chr1:159178200-159188000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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