Variant report

Variant	rs41313908
Chromosome Location	chr1:159172110-159172111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs3027009	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3027013	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3027031	0.92[EUR][1000 genomes]
rs61828181	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159158400-159174000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:159158800-159177600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:159158800-159177800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:159158800-159188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:159159600-159173200	Strong transcription	Fetal Brain Female	brain
6	chr1:159163000-159173800	Weak transcription	Fetal Brain Male	brain
7	chr1:159164200-159172600	Strong transcription	Brain Germinal Matrix	brain
8	chr1:159168000-159174000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:159168000-159177600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:159168400-159177600	Weak transcription	Brain Angular Gyrus	brain
11	chr1:159169600-159172400	Enhancers	Fetal Thymus	thymus
12	chr1:159170200-159172400	Enhancers	Primary T cells from cord blood	blood
13	chr1:159170200-159172400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr1:159170400-159172400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr1:159170400-159172400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr1:159170400-159173400	Weak transcription	Fetal Stomach	stomach
17	chr1:159170400-159173600	Weak transcription	Brain Anterior Caudate	brain
18	chr1:159170400-159174200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr1:159170400-159177800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:159170800-159174400	Enhancers	Lung	lung
21	chr1:159170800-159177600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:159171000-159172200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr1:159171000-159172200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:159171000-159173400	Bivalent Enhancer	Placenta	Placenta
25	chr1:159171200-159172200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
26	chr1:159171400-159174800	Weak transcription	Esophagus	oesophagus
27	chr1:159171600-159172400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr1:159171800-159172200	Active TSS	Spleen	Spleen
29	chr1:159171800-159172400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr1:159171800-159172400	Enhancers	Primary hematopoietic stem cells	blood
31	chr1:159171800-159174800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr1:159171800-159176000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:159172000-159172600	Weak transcription	K562	blood
34	chr1:159172000-159173000	Weak transcription	GM12878-XiMat	blood
35	chr1:159172000-159173200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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