Variant report

Variant	rs12089424
Chromosome Location	chr1:47660821-47660822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12095281	1.00[EUR][1000 genomes]
rs2405784	0.86[EUR][1000 genomes]
rs4520457	0.86[EUR][1000 genomes]
rs60078183	1.00[EUR][1000 genomes]
rs74074032	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916813	chr1:47435635-47666179	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47658800-47661200	Enhancers	K562	blood
2	chr1:47659000-47662400	Weak transcription	Adipose Nuclei	Adipose
3	chr1:47659000-47662400	Weak transcription	Pancreas	Pancrea
4	chr1:47659000-47675800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:47659200-47661000	Enhancers	HepG2	liver
6	chr1:47659200-47662200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:47660000-47666600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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