Variant report

Variant	rs74074032
Chromosome Location	chr1:47689430-47689431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:47677228-47691056	K562	blood:	n/a	n/a
2	POLR2A	chr1:47689127-47689669	K562	blood:	n/a	n/a
3	SUZ12	chr1:47689128-47692812	H1-hESC	embryonic stem cell:	n/a	n/a
4	CCNT2	chr1:47689381-47689700	K562	blood:	n/a	chr1:47689657-47689666
5	POLR2A	chr1:47689122-47689923	K562	blood:	n/a	n/a
6	CTBP2	chr1:47689137-47689692	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr1:47688790-47689644	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000226252	TF binding region

rs_ID	r²[population]
rs12089424	0.86[EUR][1000 genomes]
rs12095281	0.86[EUR][1000 genomes]
rs2405784	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4520457	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60078183	0.86[EUR][1000 genomes]

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47674400-47690600	Weak transcription	Gastric	stomach
2	chr1:47681800-47689600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:47683600-47690000	Strong transcription	K562	blood
4	chr1:47683800-47690000	Strong transcription	HUVEC	blood vessel
5	chr1:47686400-47690600	Weak transcription	Right Ventricle	heart
6	chr1:47687400-47689800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:47687600-47690200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:47688000-47689800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:47688600-47690600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:47688800-47690800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:47689200-47690200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr1:47689200-47690400	Weak transcription	Right Atrium	heart
13	chr1:47689200-47690600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr1:47689400-47689600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr1:47689400-47689600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
16	chr1:47689400-47690000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
17	chr1:47689400-47690200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr1:47689400-47690200	Strong transcription	Spleen	Spleen
19	chr1:47689400-47690400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
20	chr1:47689400-47690800	Bivalent Enhancer	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links