Variant report
| Variant | rs12091466 |
|---|---|
| Chromosome Location | chr1:217284167-217284168 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:217283584..217286068-chr1:217290036..217292853,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs11117767 | 1.00[YRI][hapmap] |
| rs12057613 | 1.00[YRI][hapmap] |
| rs12066856 | 1.00[YRI][hapmap] |
| rs12069409 | 1.00[YRI][hapmap] |
| rs12073803 | 1.00[YRI][hapmap] |
| rs12082817 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs12085414 | 1.00[YRI][hapmap] |
| rs12089012 | 1.00[YRI][hapmap] |
| rs12095017 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428610 | chr1:217143317-217307243 | Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv525040 | chr1:217283873-217285309 | Inactive region | Chromatin interactive region | n/a | n/a | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
