Variant report

Variant	rs12069409
Chromosome Location	chr1:217237974-217237975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11117767	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs11117768	0.87[AFR][1000 genomes]
rs12057613	1.00[YRI][hapmap]
rs12063778	1.00[AFR][1000 genomes]
rs12066856	1.00[YRI][hapmap]
rs12073803	1.00[YRI][hapmap]
rs12077096	0.87[AFR][1000 genomes]
rs12082817	1.00[YRI][hapmap]
rs12085414	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12089012	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12091466	1.00[YRI][hapmap]
rs12095017	1.00[YRI][hapmap]
rs12095871	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv549205	chr1:217165548-217270219	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217213400-217240600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:217221800-217251400	Weak transcription	Left Ventricle	heart
3	chr1:217223200-217250000	Weak transcription	Psoas Muscle	Psoas
4	chr1:217235400-217238000	Enhancers	Fetal Intestine Large	intestine
5	chr1:217236000-217249400	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:217237000-217249400	Weak transcription	Pancreas	Pancrea
7	chr1:217237200-217238400	Weak transcription	Fetal Heart	heart
8	chr1:217237200-217238800	Weak transcription	Fetal Intestine Small	intestine
9	chr1:217237200-217246200	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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