Variant report

Variant	rs12092395
Chromosome Location	chr1:175360652-175360653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10913001	1.00[EUR][1000 genomes]
rs10913003	1.00[EUR][1000 genomes]
rs4650736	1.00[TSI][hapmap]
rs4651401	1.00[TSI][hapmap]
rs56884251	1.00[EUR][1000 genomes]
rs704814	0.81[AFR][1000 genomes]
rs73043562	1.00[EUR][1000 genomes]
rs73045410	1.00[EUR][1000 genomes]
rs73045417	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7534171	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv831948	chr1:175229631-175407303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175343600-175363200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:175359600-175369000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:175360400-175361000	Enhancers	Aorta	Aorta
4	chr1:175360600-175362600	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links