Variant report

Variant	rs56884251
Chromosome Location	chr1:175343518-175343519
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175120938..175121807-chr1:175342792..175343567,3	MCF-7	breast:
2	chr1:175342845..175343536-chr1:176042614..176043335,2	MCF-7	breast:
3	chr1:175343089..175343675-chr1:175403109..175404076,4	K562	blood:
4	chr1:175342691..175343565-chr1:175792937..175793994,6	K562	blood:
5	chr1:175342719..175343579-chr1:175856797..175857339,2	MCF-7	breast:
6	chr1:175343047..175343556-chr1:176042452..176042953,2	K562	blood:
7	chr1:175342881..175343605-chr1:175403112..175404017,3	MCF-7	breast:
8	chr1:175343029..175343558-chr1:175712449..175713109,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10913001	1.00[EUR][1000 genomes]
rs12092395	1.00[EUR][1000 genomes]
rs2861278	0.96[AFR][1000 genomes]
rs61530561	1.00[AMR][1000 genomes]
rs73032419	0.91[AFR][1000 genomes]
rs73032442	0.88[AFR][1000 genomes]
rs73032445	0.91[AFR][1000 genomes]
rs73036254	0.81[AFR][1000 genomes]
rs73043562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73045410	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73045417	1.00[EUR][1000 genomes]
rs7534171	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv831948	chr1:175229631-175407303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3408396	chr1:175341429-175345727	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175343000-175343600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:175343000-175343600	Enhancers	Brain Cingulate Gyrus	brain
3	chr1:175343000-175343600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:175343000-175343600	Enhancers	Pancreas	Pancrea
5	chr1:175343000-175343600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr1:175343000-175343600	Enhancers	Stomach Smooth Muscle	stomach
7	chr1:175343200-175343600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:175343200-175343600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:175343200-175343600	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr1:175343200-175343600	Enhancers	Brain Anterior Caudate	brain
11	chr1:175343200-175343600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr1:175343200-175343600	Enhancers	Brain Substantia Nigra	brain
13	chr1:175343200-175343600	Enhancers	Fetal Brain Male	brain
14	chr1:175343200-175343600	Enhancers	Psoas Muscle	Psoas
15	chr1:175343200-175343600	Genic enhancers	Right Atrium	heart
16	chr1:175343400-175343600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:175343400-175343600	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
18	chr1:175343400-175349800	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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