Variant report

Variant	rs12092530
Chromosome Location	chr1:210075317-210075318
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs1028325	0.94[EUR][1000 genomes]
rs1040423	0.97[EUR][1000 genomes]
rs10779516	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10779517	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10779518	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10863799	0.94[EUR][1000 genomes]
rs1099863	0.84[EUR][1000 genomes]
rs11119363	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11119369	0.95[EUR][1000 genomes]
rs11119370	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11119374	0.88[EUR][1000 genomes]
rs11119375	0.84[EUR][1000 genomes]
rs11119376	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11119382	0.84[EUR][1000 genomes]
rs11119409	0.81[EUR][1000 genomes]
rs12025114	0.86[EUR][1000 genomes]
rs12042135	0.81[EUR][1000 genomes]
rs12078439	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12079815	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12083466	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs126277	0.86[EUR][1000 genomes]
rs126278	0.83[EUR][1000 genomes]
rs1334569	0.83[EUR][1000 genomes]
rs1387933	0.83[EUR][1000 genomes]
rs1387934	0.85[EUR][1000 genomes]
rs170552	0.84[EUR][1000 genomes]
rs170553	0.85[EUR][1000 genomes]
rs170555	0.84[EUR][1000 genomes]
rs170557	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs170558	0.85[EUR][1000 genomes]
rs183450	0.84[EUR][1000 genomes]
rs189000	0.85[EUR][1000 genomes]
rs189001	0.85[EUR][1000 genomes]
rs2142861	0.87[EUR][1000 genomes]
rs2205987	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2205988	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2205989	0.88[EUR][1000 genomes]
rs227168	0.83[EUR][1000 genomes]
rs227169	0.83[EUR][1000 genomes]
rs227170	0.83[EUR][1000 genomes]
rs227171	0.83[EUR][1000 genomes]
rs227172	0.84[EUR][1000 genomes]
rs227173	0.85[EUR][1000 genomes]
rs227174	0.84[EUR][1000 genomes]
rs227175	0.85[EUR][1000 genomes]
rs227176	0.85[EUR][1000 genomes]
rs227177	0.85[EUR][1000 genomes]
rs227178	0.83[EUR][1000 genomes]
rs227179	0.83[EUR][1000 genomes]
rs227181	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs227182	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs227183	0.85[EUR][1000 genomes]
rs227184	0.85[EUR][1000 genomes]
rs227186	0.85[EUR][1000 genomes]
rs227187	0.85[EUR][1000 genomes]
rs227188	0.85[EUR][1000 genomes]
rs227190	0.85[EUR][1000 genomes]
rs227191	0.84[EUR][1000 genomes]
rs227193	0.84[EUR][1000 genomes]
rs227195	0.85[EUR][1000 genomes]
rs227196	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs227197	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs227200	0.84[EUR][1000 genomes]
rs227201	0.83[EUR][1000 genomes]
rs227202	0.84[EUR][1000 genomes]
rs227203	0.83[EUR][1000 genomes]
rs227204	0.84[EUR][1000 genomes]
rs227205	0.84[EUR][1000 genomes]
rs227206	0.83[EUR][1000 genomes]
rs227207	0.85[EUR][1000 genomes]
rs227209	0.83[EUR][1000 genomes]
rs227211	0.83[EUR][1000 genomes]
rs227216	0.85[EUR][1000 genomes]
rs227217	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs227218	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs227219	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs227221	0.85[EUR][1000 genomes]
rs227223	0.84[EUR][1000 genomes]
rs227224	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs227225	0.80[EUR][1000 genomes]
rs227226	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs227227	0.84[EUR][1000 genomes]
rs227228	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs227229	0.85[EUR][1000 genomes]
rs227230	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs227232	0.85[EUR][1000 genomes]
rs2357212	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2636373	0.85[EUR][1000 genomes]
rs2636376	0.84[EUR][1000 genomes]
rs2743889	0.84[EUR][1000 genomes]
rs2743891	0.84[EUR][1000 genomes]
rs2884124	0.87[EUR][1000 genomes]
rs4282820	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4454550	0.93[EUR][1000 genomes]
rs4462143	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4844913	0.86[EUR][1000 genomes]
rs6540567	0.91[EUR][1000 genomes]
rs6540568	0.95[EUR][1000 genomes]
rs6540569	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6540570	0.95[EUR][1000 genomes]
rs6540573	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6662445	0.95[EUR][1000 genomes]
rs6667057	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6678081	0.94[EUR][1000 genomes]
rs6682334	0.85[EUR][1000 genomes]
rs6689456	0.84[EUR][1000 genomes]
rs6702257	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6702961	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs701947	0.84[EUR][1000 genomes]
rs701948	0.84[EUR][1000 genomes]
rs724054	0.95[EUR][1000 genomes]
rs7513171	0.85[EUR][1000 genomes]
rs7514257	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7525980	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7528647	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7530426	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7544033	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7547709	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7548989	0.83[EUR][1000 genomes]
rs7549523	0.95[EUR][1000 genomes]
rs7549696	0.99[EUR][1000 genomes]
rs846545	0.84[EUR][1000 genomes]
rs846548	0.84[EUR][1000 genomes]
rs846549	0.84[EUR][1000 genomes]
rs846550	0.83[EUR][1000 genomes]
rs846551	0.84[EUR][1000 genomes]
rs846552	0.84[EUR][1000 genomes]
rs846553	0.85[EUR][1000 genomes]
rs846554	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs846555	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs846556	0.85[EUR][1000 genomes]
rs846557	0.85[EUR][1000 genomes]
rs846559	0.85[EUR][1000 genomes]
rs9429827	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9429829	0.94[EUR][1000 genomes]
rs9429830	0.95[EUR][1000 genomes]
rs9430020	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9430024	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9430026	0.86[EUR][1000 genomes]
rs9662387	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs986057	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	esv1821635	chr1:210068117-210085756	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv873140	chr1:210068117-210335644	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv4354	chr1:210070574-210100783	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210073000-210076000	Enhancers	HMEC	breast
2	chr1:210074800-210076000	Enhancers	NHEK	skin
3	chr1:210075000-210075400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:210075200-210075600	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links