Variant report

Variant	rs9430020
Chromosome Location	chr1:210076884-210076885
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1028325	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1040423	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10779516	0.83[EUR][1000 genomes]
rs10779517	0.82[EUR][1000 genomes]
rs10779518	0.82[EUR][1000 genomes]
rs10863799	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11119363	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119369	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11119370	0.88[EUR][1000 genomes]
rs11119374	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11119375	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11119376	0.81[EUR][1000 genomes]
rs11119382	0.80[EUR][1000 genomes]
rs12025114	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12078439	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12079815	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12083466	0.98[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12092530	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs126277	0.83[EUR][1000 genomes]
rs1387934	0.81[EUR][1000 genomes]
rs170552	0.80[EUR][1000 genomes]
rs170553	0.82[EUR][1000 genomes]
rs170555	0.81[EUR][1000 genomes]
rs170558	0.82[EUR][1000 genomes]
rs183450	0.80[EUR][1000 genomes]
rs189000	0.81[EUR][1000 genomes]
rs189001	0.81[EUR][1000 genomes]
rs2142861	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2205988	0.82[EUR][1000 genomes]
rs2205989	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs227170	0.81[EUR][1000 genomes]
rs227173	0.81[EUR][1000 genomes]
rs227175	0.82[EUR][1000 genomes]
rs227176	0.81[EUR][1000 genomes]
rs227177	0.81[EUR][1000 genomes]
rs227183	0.82[EUR][1000 genomes]
rs227184	0.81[EUR][1000 genomes]
rs227186	0.81[EUR][1000 genomes]
rs227187	0.81[EUR][1000 genomes]
rs227188	0.81[EUR][1000 genomes]
rs227190	0.81[EUR][1000 genomes]
rs227195	0.81[EUR][1000 genomes]
rs227200	0.80[EUR][1000 genomes]
rs227202	0.80[EUR][1000 genomes]
rs227207	0.82[EUR][1000 genomes]
rs227216	0.81[EUR][1000 genomes]
rs227221	0.81[EUR][1000 genomes]
rs227223	0.81[EUR][1000 genomes]
rs227227	0.81[EUR][1000 genomes]
rs227229	0.82[EUR][1000 genomes]
rs227232	0.82[EUR][1000 genomes]
rs2357212	0.88[EUR][1000 genomes]
rs2636373	0.82[EUR][1000 genomes]
rs2743891	0.81[EUR][1000 genomes]
rs2884124	0.83[EUR][1000 genomes]
rs4282820	0.81[EUR][1000 genomes]
rs4454550	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4462143	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4844913	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6540567	0.86[EUR][1000 genomes]
rs6540568	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6540569	0.88[EUR][1000 genomes]
rs6540570	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6540573	0.81[EUR][1000 genomes]
rs6662445	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6667057	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6678081	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6682334	0.81[EUR][1000 genomes]
rs6689456	0.80[EUR][1000 genomes]
rs6702961	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs724054	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7513171	0.81[EUR][1000 genomes]
rs7528647	0.87[EUR][1000 genomes]
rs7530426	0.82[EUR][1000 genomes]
rs7544033	0.87[EUR][1000 genomes]
rs7549523	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7549696	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846545	0.80[EUR][1000 genomes]
rs846548	0.81[EUR][1000 genomes]
rs846549	0.80[EUR][1000 genomes]
rs846553	0.81[EUR][1000 genomes]
rs846556	0.82[EUR][1000 genomes]
rs846557	0.82[EUR][1000 genomes]
rs846559	0.81[EUR][1000 genomes]
rs9429827	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9429829	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9429830	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9430024	0.88[EUR][1000 genomes]
rs9430026	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9662387	0.88[EUR][1000 genomes]
rs986057	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	esv1821635	chr1:210068117-210085756	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv873140	chr1:210068117-210335644	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv4354	chr1:210070574-210100783	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv826498	chr1:210075927-210086136	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3319564	chr1:210076329-210087927	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1821162	chr1:210076345-210086267	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2481942	chr1:210076504-210093838	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210076200-210077000	Enhancers	HMEC	breast

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