Variant report

Variant	rs12093046
Chromosome Location	chr1:77719206-77719207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11162294	0.92[AFR][1000 genomes]
rs12083929	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6658551	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432398	chr1:77707391-77740836	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77718800-77719400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:77719000-77719400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:77719000-77719600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:77719200-77719600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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