Variant report

Variant	rs6658551
Chromosome Location	chr1:77745504-77745505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:77744169..77746110-chr1:77748254..77750712,2	K562	blood:

Variant related genes	Relation type
ENSG00000154027	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11162294	0.83[AMR][1000 genomes]
rs11162306	0.83[AMR][1000 genomes]
rs12062309	0.83[AMR][1000 genomes]
rs12065011	0.83[AMR][1000 genomes]
rs12076331	0.83[AMR][1000 genomes]
rs12093046	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77737200-77747400	Weak transcription	Aorta	Aorta
2	chr1:77738400-77746600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:77740200-77746800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:77743600-77746600	Weak transcription	NHDF-Ad	bronchial
5	chr1:77744800-77745600	Enhancers	Primary T cells from cord blood	blood
6	chr1:77744800-77745800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr1:77745000-77745800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:77745200-77745600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:77745200-77745800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:77745200-77746400	Enhancers	Primary hematopoietic stem cells	blood
11	chr1:77745200-77746400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:77745200-77746400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:77745200-77747200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr1:77745200-77747200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr1:77745200-77747200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr1:77745200-77747800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
17	chr1:77745400-77745600	Enhancers	Primary B cells from peripheral blood	blood
18	chr1:77745400-77745600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr1:77745400-77745800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
20	chr1:77745400-77746000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:77745400-77746200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr1:77745400-77746200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:77745400-77746400	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
24	chr1:77745400-77747000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr1:77745400-77747400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood

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