Variant report

Variant	rs12094929
Chromosome Location	chr1:221080310-221080311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11118631	1.00[AMR][1000 genomes]
rs12070196	1.00[AMR][1000 genomes]
rs12077879	1.00[AMR][1000 genomes]
rs12085864	1.00[AMR][1000 genomes]
rs6675094	1.00[AMR][1000 genomes]
rs72472323	1.00[AMR][1000 genomes]
rs73102245	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221077400-221080800	Enhancers	Fetal Muscle Leg	muscle
2	chr1:221079200-221081200	Enhancers	Hela-S3	cervix
3	chr1:221079400-221080800	Enhancers	Liver	Liver
4	chr1:221079400-221081000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:221079400-221081200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:221079400-221081200	Enhancers	A549	lung
7	chr1:221079800-221080800	Enhancers	HMEC	breast
8	chr1:221079800-221081000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:221079800-221081000	Enhancers	NHDF-Ad	bronchial
10	chr1:221079800-221081000	Enhancers	Osteobl	bone
11	chr1:221080000-221080600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:221080000-221080600	Enhancers	Colon Smooth Muscle	Colon
13	chr1:221080000-221080800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:221080000-221081000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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