Variant report

Variant	rs12095201
Chromosome Location	chr1:190098788-190098789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10800902	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10800903	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10920547	1.00[CHB][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10920558	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10920571	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10920591	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11801040	1.00[CHB][hapmap];0.87[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062965	0.83[AMR][1000 genomes]
rs12082082	1.00[CHB][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs12091589	1.00[CHB][hapmap]
rs12240154	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs13376125	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16832010	1.00[CHB][hapmap]
rs6673983	1.00[CHB][hapmap]
rs6703431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73054800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73054801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73056703	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7530528	1.00[CHB][hapmap]
rs7533811	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868954	chr1:189605447-190135265	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv548532	chr1:189758772-190371671	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv917005	chr1:189855484-190259380	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832104	chr1:189990148-190186708	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv548547	chr1:190063211-190104227	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv548548	chr1:190063211-190108881	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv548549	chr1:190063211-190116362	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv548550	chr1:190064165-190116362	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv872753	chr1:190064165-190135811	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:190098200-190098800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:190098400-190099000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr1:190098400-190099400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:190098400-190099800	Enhancers	Brain Angular Gyrus	brain
5	chr1:190098600-190099000	Enhancers	Brain Anterior Caudate	brain
6	chr1:190098600-190099000	Enhancers	Brain Substantia Nigra	brain
7	chr1:190098600-190099800	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:190098600-190099800	Enhancers	Brain Hippocampus Middle	brain

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