Variant report

Variant	rs6673983
Chromosome Location	chr1:190252848-190252849
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10800902	1.00[CHB][hapmap]
rs10800903	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10920547	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10920558	1.00[ASN][1000 genomes]
rs10920571	1.00[ASN][1000 genomes]
rs10920591	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11801040	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12062965	1.00[ASN][1000 genomes]
rs12082082	1.00[CHB][hapmap]
rs12091589	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12095201	1.00[CHB][hapmap]
rs12240154	1.00[CHB][hapmap]
rs13376125	1.00[ASN][1000 genomes]
rs16832010	1.00[CHB][hapmap]
rs2419064	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs4462144	1.00[CHB][hapmap]
rs491162	1.00[CHB][hapmap]
rs6428017	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6661272	1.00[YRI][hapmap]
rs6684241	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6701370	1.00[CHB][hapmap]
rs6703431	1.00[ASN][1000 genomes]
rs73054800	1.00[ASN][1000 genomes]
rs73054801	1.00[ASN][1000 genomes]
rs73056703	1.00[ASN][1000 genomes]
rs74130750	1.00[AMR][1000 genomes]
rs74130763	1.00[AMR][1000 genomes]
rs7530507	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7530528	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7533811	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548532	chr1:189758772-190371671	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917005	chr1:189855484-190259380	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1003035	chr1:190123195-190291554	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv872756	chr1:190164775-190287713	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1013402	chr1:190197674-190332464	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	nsv535246	chr1:190197674-190332464	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	esv3427780	chr1:190251129-190254727	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:190249800-190267200	Weak transcription	Fetal Intestine Small	intestine

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